graphSSM

Plot the observed time-series and the estimated population trajectories for a multivariate Gaussian state-space model (SSM).

Provides functions to simulate data sets from hierarchical ecological models, including all the simulations described in the two volume publication 'Applied Hierarchical Modeling in Ecology: Analysis of distribution, abundance and species richness in R and BUGS' by Marc Kéry and Andy Royle: volume 1 (2016, ISBN: 978-0-12-801378-6) and volume 2 (2021, ISBN: 978-0-12-809585-0), <https://www.mbr-pwrc.usgs.gov/pubanalysis/keryroylebook/>. It also has all the utility functions and data sets needed to replicate the analyses shown in the books.

Ken Kellner

AHMbook

Functions and Data for the Book 'Applied Hierarchical Modeling
in Ecology' Vols 1 and 2

Marc Kéry

Andy Royle

Mike Meredith

Urs Breitenmoser

Richard Chandler

Bob Dorazio

Evan Grant

John-Andren Henden

Roland Kays

David King

Xavier Lambin

Jeremy Mizel

Anja Molinari-Jobin

René-Jean Monneret

Arielle Parsons

René Ruffinoni

Michael Schaub

Rahel Solmann

Nicolas Strebel

Chris Sutherland

Mathias Tobler

Gesa von Hirschheydt

Fridolin Zimmermann

Aargau Biodiversity Monitoring Program (LANAG) 

British Ornithological Trust 

Butterfly Conservation 

Centre for Ecology & Hydrology 

Dutch Centre for Field Ornithology (Sovon) 

eMammal 

Groupe Pèlerin Jura 

Hubbard Brook Ecosystem Study 

Joint Nature Conservation Committee (JNCC) 

North Carolina Museum of Natural Sciences 

North Carolina State University 

Progetto Lince Italia 

Swiss Federal Statistical Office 

Swiss Foundation KORA Carnivore Ecology and Wildlife Management (SCALP project) 

Swiss Ornithological Institute 

UK Butterfly Monitoring Scheme (UKBMS) 

graphSSM function

<dl> <dt>ssm</dt>
<dd>An object of class <code>jagsUI</code> with the results of fitting the SSM model.</dd> <dt>C</dt>
<dd>The original count data: an individuals x year matrix of counts, no missing values.</dd></dl>

Arguments

Marc Kéry &amp; Andy Royle, adapted for multivariate SSMs from the SSM graphing function <code>graph.ssm</code> in Chapter 5 in Kéry &amp; Schaub (2012).

Author

Plot the results for a Gaussian state-space model — graphSSM

<dl>

 <dt>ssm</dt>
<dd>An object of class <code>jagsUI</code> with the results of fitting the SSM model.</dd>

 <dt>C</dt>
<dd>The original count data: an individuals x year matrix of counts, no missing values.</dd>

</dl>

Plot the results for a Gaussian state-space model

graphSSM: Plot the results for a Gaussian state-space model

Description

Usage

Value

Arguments

Author

References