plot_Nmix_resi

plot.Nmix.resi

Function does diagnostic plots for one binomial N-mixture model fitted with all three mixture distributions currently available in package unmarked: Poisson, negative binomial and zero-inflated Poisson. For each, fitted values vs. observed data and residuals vs. fitted values are plotted.

Provides functions to simulate data sets from hierarchical ecological models, including all the simulations described in the two volume publication 'Applied Hierarchical Modeling in Ecology: Analysis of distribution, abundance and species richness in R and BUGS' by Marc Kéry and Andy Royle: volume 1 (2016, ISBN: 978-0-12-801378-6) and volume 2 (2021, ISBN: 978-0-12-809585-0), <https://www.mbr-pwrc.usgs.gov/pubanalysis/keryroylebook/>. It also has all the utility functions and data sets needed to replicate the analyses shown in the books.

Ken Kellner

AHMbook

Functions and Data for the Book 'Applied Hierarchical Modeling
in Ecology' Vols 1 and 2

Marc Kéry

Andy Royle

Mike Meredith

Urs Breitenmoser

Richard Chandler

Bob Dorazio

Evan Grant

John-Andren Henden

Roland Kays

David King

Xavier Lambin

Jeremy Mizel

Anja Molinari-Jobin

René-Jean Monneret

Arielle Parsons

René Ruffinoni

Michael Schaub

Rahel Solmann

Nicolas Strebel

Chris Sutherland

Mathias Tobler

Gesa von Hirschheydt

Fridolin Zimmermann

Aargau Biodiversity Monitoring Program (LANAG) 

British Ornithological Trust 

Butterfly Conservation 

Centre for Ecology & Hydrology 

Dutch Centre for Field Ornithology (Sovon) 

eMammal 

Groupe Pèlerin Jura 

Hubbard Brook Ecosystem Study 

Joint Nature Conservation Committee (JNCC) 

North Carolina Museum of Natural Sciences 

North Carolina State University 

Progetto Lince Italia 

Swiss Federal Statistical Office 

Swiss Foundation KORA Carnivore Ecology and Wildlife Management (SCALP project) 

Swiss Ornithological Institute 

UK Butterfly Monitoring Scheme (UKBMS) 

plot_Nmix_resi function

<dl> <dt>fmP</dt>
<dd>Fitted model object for Poisson distribution.</dd> <dt>fmNB</dt>
<dd>Fitted model object for negative binomial distribution.</dd> <dt>fmZIP</dt>
<dd>Fitted model object for zero-inflated Poisson distribution.</dd></dl>

Arguments

Author

Produce some residual plots — plot_Nmix_resi

<dl>

 <dt>fmP</dt>
<dd>Fitted model object for Poisson distribution.</dd>

 <dt>fmNB</dt>
<dd>Fitted model object for negative binomial distribution.</dd>

 <dt>fmZIP</dt>
<dd>Fitted model object for zero-inflated Poisson distribution.</dd>

</dl>

Produce some residual plots

plot_Nmix_resi: Produce some residual plots

Description

Usage

Value

Arguments

Author

References