ANTsR (version 0.4.0)

regressionNetworkViz: Visualize a regression result by a d3 network visualization.

Description

Use either a force directed graph or a Sankey graph to show relationships between predictors and outcome variables. correlateMyOutcomes should correspond to the outcome variables ...

Usage

regressionNetworkViz(mylm, sigthresh = 0.05, whichviz = "Sankey",
  outfile = "temp.html", mygroup = 0, logvals = TRUE, verbose = FALSE,
  correlateMyOutcomes = NA, corthresh = 0.9, zoom = F, doFDR = TRUE)

Arguments

mylm

lm model output from bigLMStats

sigthresh

significance threshold

whichviz

which visualization method

outfile

significance threshold

mygroup

color each entry by group membership

logvals

bool

verbose

bool

correlateMyOutcomes

not sure, see code

corthresh

correlation threshold

zoom

zooming factor

doFDR

bool

Value

html file is output

Examples

# NOT RUN {
# }
# NOT RUN {
colnames(brainpreds)<-paste('Vox',c(1:ncol(brainpreds)),sep='')
colnames( mylm$beta.pval )<-colnames(brainpreds)
demognames<-rownames(mylm$beta.pval)
myout = regressionNetworkViz( mylm , sigthresh=0.05, outfile='temp2.html')
# }
# NOT RUN {
# }