ANTsR (version 1.0)

KellyKapowski: Compute cortical thickness using the DiReCT algorithm.

Description

Diffeomorphic registration-based cortical thickness based on probabilistic segmentation of an image. This is an optimization algorithm.

Usage

KellyKapowski( d=3, s=simg, g=gimg, w=wimg, c="[45,0.0,10]", r=0.5, m=1, o=oimg )

Arguments

imageDimension 2|3|4

Number of dimensions of the input image

inputImage

Input image to operate on

s

segmentation image

g

gray matter probability image

w

white matter probability image

c

convergence params - first controls iterations

r

gradient descent update parameter

m

gradient field smoothing parameter

Value

0 -- Success 1 -- Failure

Examples

# NOT RUN {
KellyKapowski( d=3, s=simg, g=gimg,w=wimg,c=45,r=0.5,m=1,o=oimg )
# }