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ARTP (version 2.0.5)

Gene and Pathway p-Values Computed using the Adaptive Rank Truncated Product

Description

For calculating gene and pathway p-values using the Adaptive Rank Truncated Product test.

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Version

Install

install.packages('ARTP')

Monthly Downloads

32

Version

2.0.5

License

GPL-2

Maintainer

Bill Wheeler

Last Published

April 6th, 2018

Functions in ARTP (2.0.5)

ARTP

Gene and pathway p-values using the Adaptive Rank Truncated Product test
pheno_data

Sample covariate and response data
gene_SNP_data

Gene-SNP data
ARTP_pathway

Gene and pathway p-values using ARTP
pheno.list

List to describe the covariate and outcome data
gene.list

List to describe the gene-SNP file
perm_pvalues

Permutation p-values
plot_genes

Gene Plot
geno_data

Sample genotype data
obs_pvalues

Observed p-values
snp.list

List to describe the genotype data
single.marker.test

Single SNP test
runPermutations

Calculate observed and permutation p-values for SNPs