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ARTP (version 2.0.5)
Gene and Pathway p-Values Computed using the Adaptive Rank Truncated Product
Description
For calculating gene and pathway p-values using the Adaptive Rank Truncated Product test.
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Version
Version
2.0.5
2.0.4
2.0.3
Install
install.packages('ARTP')
Monthly Downloads
45
Version
2.0.5
License
GPL-2
Maintainer
Bill Wheeler
Last Published
April 6th, 2018
Functions in ARTP (2.0.5)
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ARTP
Gene and pathway p-values using the Adaptive Rank Truncated Product test
pheno_data
Sample covariate and response data
gene_SNP_data
Gene-SNP data
ARTP_pathway
Gene and pathway p-values using ARTP
pheno.list
List to describe the covariate and outcome data
gene.list
List to describe the gene-SNP file
perm_pvalues
Permutation p-values
plot_genes
Gene Plot
geno_data
Sample genotype data
obs_pvalues
Observed p-values
snp.list
List to describe the genotype data
single.marker.test
Single SNP test
runPermutations
Calculate observed and permutation p-values for SNPs