AlignStat (version 1.3.1)

plot_SP_summary: A line plot summary of sum of pairs score between two multiple sequence alignments

Description

A line plot summary of sum of pairs score between two multiple sequence alignments

Usage

plot_SP_summary(x, CS = TRUE, display = TRUE)

Arguments

x

an object of type "pairwise alignment comparison" (typically the summary file generated by compare_alignments)

CS

indicate columns with 100 percent identity using markers on the x-axis (default = TRUE)

display

display this plot (default = TRUE)

Examples

data(reference_alignment)
data(comparison_alignment)
PAC <- compare_alignments(reference_alignment, comparison_alignment, SP=TRUE)
plot_SP_summary(PAC)