AlignStat (version 1.3.1)

plot_dissimilarity_summary: An area plot summary of the different causes of column dissimilarity between two multiple sequence alignments

Description

An area plot summary of the different causes of column dissimilarity between two multiple sequence alignments

Usage

plot_dissimilarity_summary(x, scale = TRUE, stack = TRUE, display = TRUE)

Arguments

x

an object of type "pairwise alignment comparison" (typically the summary file generated by compare_alignments)

scale

scale data to proportion of characters that are not conserved gaps (default = TRUE)

stack

stacked area plot in stead of line plot (default = TRUE)

display

display this plot (default = TRUE)

Examples

data(reference_alignment)
data(comparison_alignment)
PAC <- compare_alignments(reference_alignment, comparison_alignment)
plot_dissimilarity_summary(PAC, stack=TRUE)