AlignStat (version 1.3.1)

plot_similarity_heatmap: A heatmap plot of the column identities between two multiple sequence alignments

Description

A heatmap plot of the column identities between two multiple sequence alignments

Usage

plot_similarity_heatmap(x, scale = TRUE, display = TRUE)

Arguments

x

an object of type "pairwise alignment comparison" (typically the summary file generated by compare_alignments)

scale

scale data to proportion of characters that are not conserved gaps (default = TRUE)

display

display this plot (default = TRUE)

Examples

data(reference_alignment)
data(comparison_alignment)
PAC <- compare_alignments(reference_alignment,comparison_alignment)
plot_similarity_heatmap(PAC)