reference_alignment

datasets

Methods for comparing two alternative multiple
sequence alignments (MSAs) to determine whether they align homologous residues in
the same columns as one another. It then classifies similarities and differences
into conserved gaps, conserved sequence, merges, splits or shifts of one MSA relative
to the other. Summarising these categories for each MSA column yields information
on which sequence regions are agreed upon my both MSAs, and which differ. Several
plotting functions enable easily visualisation of the comparison data for analysis.

Thomas Shafee

AlignStat

Comparison of Alternative Multiple Sequence Alignments

reference_alignment function

A data frame with sequences in columns and amino acid in rows

reference_alignment: Reference Alignment

Description

Usage

Arguments

Format