AllelicImbalance (version 1.10.2)

DetectedAI-summary: DetectedAI summary

Description

Summary helper functions for the DetectedAI-class

Usage

frequency_vs_threshold_variable_summary(x, ...)
"frequency_vs_threshold_variable_summary"(x, var = "threshold.count.sample", return.class = "matrix", ...)
detectedAI_vs_threshold_variable_summary(x, ...)
"detectedAI_vs_threshold_variable_summary"(x, var = "threshold.count.sample")
usedSNPs_vs_threshold_variable_summary(x, ...)
"usedSNPs_vs_threshold_variable_summary"(x, var = "threshold.count.sample")

Arguments

x

detectedAI object

...

pass on variables internally

var

string, see details for available options

return.class

'matrix' or 'array'

Details

Summary helper functions. The documentation will be improved before next release.

Examples

#some example code here
#generate example
data(ASEset)
a <- ASEset
dai <- detectAI(a, 
			threshold.count.sample=1:50,
			threshold.frequency=seq(0,0.5,by=0.01),
			threshold.delta.frequency=seq(0,0.5,by=0.01),
			threshold.pvalue=rev(seq(0.001,0.05, by=0.005))
)

frequency_vs_threshold_variable_summary(dai)