AllelicImbalance (version 1.10.2)

decorateWithExons: decorateWithExons

Description

Internal function that can draw gene regions on pre-specified surfaces. Necessary for the genomic-location plots.

Usage

decorateWithExons(x, exonsInRegion, xlim, ylim, chromosome)

Arguments

x

ASEset object

exonsInRegion

GRanges object with generegions. Can be obtained using getExonsFromAnnotation. Must contain a column 'tx_name'

xlim

xlim values for the pre-specified surface

ylim

ylim values for the pre-specified surface

chromosome

character

Value

decorateWithExons returns nothing, but draws genes

Details

The main intention of this function is to be used when plotting several bar plots in the same window. This function add gene regions under the bars.

See Also

• The locationplot which is uses this function internally.
• The decorateWithGenes which is another similar function that locationplot uses internally.

Examples

  data(ASEset)