AllelicImbalance (version 1.10.2)

inferAltAllele: inferAltAllele

Description

inference of the alternate allele based on count data

Arguments

x

matrix see examples

return.class

class of returned object

allele.source

'arank'

verbose

make function more talkative

...

arguments to forward to internal functions

Details

The inference essentially ranks all alleles and the most expressed allele not declared as reference will be inferred as the alternative allele. At the moment only inference of bi-allelic alternative alleles are available.

Examples

#load data
data(ASEset)

alt <- inferAltAllele(ASEset)