AllelicImbalance (version 1.10.2)

inferGenotypes: infererence of genotypes from ASEset count data

Description

inference of genotypes

Usage

inferGenotypes(x, strand = "*", return.class = "matrix", return.allele.allowed = "bi", threshold.frequency = 0, threshold.count.sample = 1)

Arguments

x

ASEset

strand

strand to infer from

return.class

'matrix' or 'vector'

return.allele.allowed

vector with 'bi' 'tri' or 'quad'. 'uni' Always gets returned

threshold.frequency

least fraction to classify (see details)

threshold.count.sample

least amount of counts to try to infer allele

Details

Oftern necessary information to link AI to SNPs outside coding region

Examples

data(ASEset)
g <- inferGenotypes(ASEset)