AllelicImbalance (version 1.10.2)

minCountFilt: minCountFilt methods

Description

filter on minCountFilt snps

Usage

minCountFilt(x, ...)
"minCountFilt"(x, strand = "*", threshold.counts = 1, sum = "all", replace.with = "zero", return.class = "ASEset")

Arguments

x

ASEset object

...

internal param

strand

strand to infer from

threshold.counts

cutoff for read counts (see details)

sum

'each' or 'all'

replace.with

only option 'zero'

return.class

'ASEset', 'array' or 'matrix'

Details

Description info here

Examples

#load example data
data(ASEset)
a <- ASEset

minCountFilt(a)