AllelicImbalance (version 1.10.2)

minFreqFilt: minFreqFilt methods

Description

filter on minFreqFilt snps

Usage

minFreqFilt(x, ...)
"minFreqFilt"(x, strand = "*", threshold.frequency = 0.1, replace.with = "zero", return.class = "ASEset", sum = "all")

Arguments

x

ASEset object

...

internal param

strand

strand to infer from

threshold.frequency

least fraction to classify (see details)

replace.with

only option 'zero'

return.class

'ASEset', 'array' or 'matrix'

sum

'each' or 'all'

Details

Description info here

Examples

#load example data
data(ASEset)
a <- ASEset

minFreqFilt(a)