AllelicImbalance (version 1.10.2)

refAllele: Reference allele

Description

Extract the allele based on SNP location from the reference fasta file

Usage

refAllele(x, fasta)

Arguments

x

ASEset object

fasta

path to fasta file, index should be located in the same folder

Details

The alleles will be placed in the rowRanges() meta column 'ref'

Examples

#load example data
data(ASEset.sim)

fasta <- system.file('extdata/hg19.chr17.subset.fa', package='AllelicImbalance')
a <- refAllele(ASEset.sim,fasta=fasta)