BAMBI (version 2.3.5)

extractsamples: Extract MCMC samples for parameters from an angmcmc object

Description

Extract MCMC samples for parameters from an angmcmc object

Usage

extractsamples(object, par.name, comp.label, chain.no, drop = TRUE, ...)

Value

Returns a four dimensional array with

dimension 1 - model parameters and mixing proportions dimention 2 - components dimension 3 - MCMC iterations dimension 4 - chain number

Arguments

object

angular MCMC object

par.name

vector of names of parameters for which point estimates are to be computed. If NULL, results for all parameters are provided.

comp.label

vector of component labels (positive integers, e.g., 1, 2, ...) for which point estimates are to be computed. If NULL, results for all components are provided.

chain.no

vector of chain numbers whose samples are to be be used. in the estimation. By default all chains are used.

drop

logical. Should the dimension of the output be dropped, if par.name, comp.label or chain.no has a single level?

...

additional arguments to be passed to the function.

Details

The default for both par.name and comp.label are the all possible choices available in object.

Examples

# first fit a vmsin mixture model
# illustration only - more iterations needed for convergence
fit.vmsin.20 <- fit_vmsinmix(tim8, ncomp = 3, n.iter =  20,
                             n.chains = 1)
# extract Markov chain realizations for kappa1 from component 1
extr_kappa1_1 <- extractsamples(fit.vmsin.20, "kappa1", 1)
# for kappa1 from component from all components
extr_kappa1 <- extractsamples(fit.vmsin.20, "kappa1")
# for all parameters in component 1
extr_1 <- extractsamples(fit.vmsin.20, comp.label = 1)