transparentColor

Converts a named color and opacity and returns the proper RGB
 code.

manip

Provides functions for analyzing and visualizing complex
macroevolutionary dynamics on phylogenetic trees. It is a companion
package to the command line program BAMM (Bayesian Analysis of
Macroevolutionary Mixtures) and is entirely oriented towards the analysis,
interpretation, and visualization of evolutionary rates. Functionality
includes visualization of rate shifts on phylogenies, estimating
evolutionary rates through time, comparing posterior distributions of
evolutionary rates across clades, comparing diversification models using
Bayes factors, and more.

Pascal Title

BAMMtools

Analysis and Visualization of Macroevolutionary Dynamics on
Phylogenetic Trees

Dan Rabosky

Michael Grundler

Carlos Anderson

Jeff Shi

Joseph Brown

Huateng Huang

Jon Mitchell

transparentColor function

<dl><dt>namedColor</dt>
<dd>A color name.</dd>
<dt>alpha</dt>
<dd>A transparency value between 0 and 1, where 0 is fully
transparent.</dd></dl>

Arguments

Author

Define colors with transparency — transparentColor

<dl>

<dt>namedColor</dt>
<dd>A color name.</dd>


<dt>alpha</dt>
<dd>A transparency value between 0 and 1, where 0 is fully
transparent.</dd>

</dl>

Define colors with transparency

transparentColor: Define colors with transparency

Description

Usage

Value

Arguments

Author

Details