writeEventData

Takes a <code>bammdata</code> object and re-writes it back into a
 treefile and an event csv file.

Provides functions for analyzing and visualizing complex
macroevolutionary dynamics on phylogenetic trees. It is a companion
package to the command line program BAMM (Bayesian Analysis of
Macroevolutionary Mixtures) and is entirely oriented towards the analysis,
interpretation, and visualization of evolutionary rates. Functionality
includes visualization of rate shifts on phylogenies, estimating
evolutionary rates through time, comparing posterior distributions of
evolutionary rates across clades, comparing diversification models using
Bayes factors, and more.

Pascal Title

BAMMtools

Analysis and Visualization of Macroevolutionary Dynamics on
Phylogenetic Trees

Dan Rabosky

Michael Grundler

Carlos Anderson

Jeff Shi

Joseph Brown

Huateng Huang

Jon Mitchell

writeEventData function

<dl><dt>ephy</dt>
<dd>A <code>bammdata</code> object.</dd>
<dt>outtreefile</dt>
<dd>The file name for outputting the tree.</dd>
<dt>outeventfile</dt>
<dd>The file name for outputting the event csv file.</dd>
<dt>...</dt>
<dd>Additional arguments to pass to <code>write.csv</code>.</dd></dl>

Arguments

Write a bammdata object to disk — writeEventData

<dl>

<dt>ephy</dt>
<dd>A <code>bammdata</code> object.</dd>


<dt>outtreefile</dt>
<dd>The file name for outputting the tree.</dd>


<dt>outeventfile</dt>
<dd>The file name for outputting the event csv file.</dd>


<dt>...</dt>
<dd>Additional arguments to pass to <code>write.csv</code>.</dd>

</dl>

writeEventData: Write a `bammdata` object to disk

Description

Usage

Arguments

See Also