BASiCS (version 0.3.1)

BASiCS_VarThresholdSearchHVG: Detection method for highly and lowly variable genes using a grid of variance contribution thresholds

Description

Detection method for highly and lowly variable genes using a grid of variance contribution thresholds

Usage

BASiCS_VarThresholdSearchHVG(Data, object, VarThresholdsGrid,
  PrintProgress = FALSE)
BASiCS_VarThresholdSearchLVG(Data, object, VarThresholdsGrid,
  PrintProgress = FALSE)

Arguments

Data

an object of class BASiCS_Data-class

object

an object of class BASiCS_Chain-class

VarThresholdsGrid

Grid of values for the variance contribution threshold (they must be contained in (0,1))

PrintProgress

If PrintProgress = TRUE, partial output is printed in the console.

Value

BASiCS_VarThresholdSearchHVG

A table displaying the results of highly variable genes detecting for different variance contribution thresholds.

BASiCS_VarThresholdSearchLVG

A table displaying the results of lowly variable genes detecting for different variance contribution thresholds.oo

Details

See vignette

See Also

BASiCS_Chain-class

Examples

# NOT RUN {
# See
help(BASiCS_MCMC)
# }