BASiCS (version 0.3.1)

plot-BASiCS_Chain-method: 'plot' method for BASiCS_Chain objects

Description

'plot' method for BASiCS_Chain objects

Usage

# S4 method for BASiCS_Chain
plot(x, Param = "mu", Gene = NULL, Cell = NULL,
  Batch = 1, ylab = "", xlab = "", ...)

Arguments

x

A BASiCS_Chain object.

Param

Name of the slot to be used for the plot. Possible values: mu, delta, phi, s, nu, theta

Gene

Specifies which gene is requested. Required only if Param = "mu" or "delta"

Cell

Specifies which cell is requested. Required only if Param = "phi", "s" or "nu"

Batch

Specifies which batch is requested. Required only if Param = "theta"

ylab

As in par.

xlab

As in par.

...

Other graphical parameters (see par).

References

Vallejos, Marioni and Richardson (2015). Bayesian Analysis of Single-Cell Sequencing data.

Examples

# NOT RUN {
# See
help(BASiCS_MCMC)
# }