BASiCS (version 1.1.0)

BASiCS_Chain-methods: 'show' method for BASiCS_Chain objects

Description

'show' method for '>BASiCS_Chain objects.

'updateObject' method for '>BASiCS_Chain objects. It is used to convert outdated '>BASiCS_Chain objects into a version that is compatible with the Bioconductor release of BASiCS. Do not use this method is '>BASiCS_Chain already contains a parameters slot.

Usage

# S4 method for BASiCS_Chain
show(object)
# S4 method for BASiCS_Chain
updateObject(object, ..., verbose = FALSE)

Arguments

object

A '>BASiCS_Chain object.

...

Additional arguments of updateObject generic method. Not used within BASiCS.

verbose

Additional argument of updateObject generic method. Not used within BASiCS.

Value

Prints a summary of the properties of object.

Returns an updated '>BASiCS_Chain object that contains all model parameters in a single slot object (list).

References

Vallejos, Marioni and Richardson (2015). PLoS Computational Biology.

Vallejos, Marioni and Richardson (2015). PLoS Computational Biology.

Examples

# NOT RUN {
Data <- makeExampleBASiCS_Data()
Chain <- BASiCS_MCMC(Data, N = 50, Thin = 2, Burn = 2)


# Not run
# New_Chain <- updateObject(Old_Chain)

# }