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BCRANK (version 1.34.0)

Predicting binding site consensus from ranked DNA sequences

Description

Functions and classes for de novo prediction of transcription factor binding consensus by heuristic search

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Version

Version

1.34.0

License

GPL-2

Maintainer

Adam Ameur

Last Published

February 15th, 2017

Functions in BCRANK (1.34.0)

BCRANKresult-class

Class "BCRANKresult"
BCRANKmatch-class

Class "BCRANKmatch"
BCRANKsearch-class

Class "BCRANKsearch"
matchingSites

Report IUPAC consensus occurrences in a fasta file
bcrank

BCRANK: predicting binding site consensus from ranked DNA sequences
BCRANKout

BCRANK results for USF1 ChIP-chip data
BCRANK-internal

BCRANK-internal