BDgraph (version 2.23)

traceplot: Trace plot of graph size

Description

Trace plot for graph size for the objects of S3 class "bdgraph", from function bdgraph. It is a tool for monitoring the convergence of the sampling algorithms, BDMCMC and RJMCMC.

Usage

traceplot ( x, acf = FALSE, pacf = FALSE, main = NULL, ... )

Arguments

x

An object of S3 class "bdgraph", from function bdgraph.

acf

Visualize the autocorrelation functions for graph size. The default is FALSE.

pacf

Visualize the partial autocorrelations for graph size. The default is FALSE.

main

Graphical parameter (see plot).

...

System reserved (no specific usage).

References

Mohammadi, A. and E. Wit (2015). Bayesian Structure Learning in Sparse Gaussian Graphical Models, Bayesian Analysis, 10(1):109-138 Mohammadi, A. and E. Wit (2015). BDgraph: An R Package for Bayesian Structure Learning in Graphical Models, arXiv:1501.05108 Mohammadi, A., F. Abegaz Yazew, E. van den Heuvel, and E. Wit (2015). Bayesian Gaussian Copula Graphical Modeling for Dupuytren Disease, arXiv:1501.04849

See Also

bdgraph

Examples

# generating multivariate normal data from a 'random' graph
data.sim <- bdgraph.sim( n = 50, p = 6, size = 7, vis = TRUE )

output <- bdgraph( data = data.sim, iter = 10000, burnin = 0, save.all = TRUE )

traceplot( output )

traceplot( output, acf = TRUE, pacf = TRUE )