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BDgraph (version 2.33)

Bayesian Structure Learning in Graphical Models using Birth-Death MCMC

Description

Provides statistical tools for Bayesian structure learning in undirected graphical models with both continuous and discrete variables.

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Version

Install

install.packages('BDgraph')

Monthly Downloads

2,168

Version

2.33

License

GPL (>= 2)

Maintainer

Abdolreza Mohammadi

Last Published

February 12th, 2017

Functions in BDgraph (2.33)

plotcoda

Convergence plot
plot.bdgraph

Plot function for
BDgraph-internal

Internal BDgraph functions and datasets
geneExpression

Human gene expression dataset
BDgraph-package

Bayesian Structure Learning in Graphical Models
bdgraph

Search algorithm in graphical models
plot.sim

Plot function for
bdgraph.ts

Search algorithm in time series graphical models
compare

Comparing the results
bdgraph.sim

Synthetic graph data generator
traceplot

Trace plot of graph size
surveyData

Labor force survey data
print.bdgraph

Print function for
plotroc

ROC plot
print.sim

Print function for
summary.bdgraph

Summary function for
pgraph

Posterior probabilities of the graphs
gnorm

Log of the normalizing constant of G-Wishart distribution
bdgraph.npn

Nonparametric transfer
rgcwish

Sampling from complex G-Wishart distribution
rgwish

Sampling from G-Wishart distribution
plinks

Estimated posterior link probabilities
rcwish

Sampling from Complex Wishart distribution
rwish

Sampling from Wishart distribution
select

Graph selection