AlignmentFilter

Align

Alleles

Locus

<p>Filter Protein Exon Alignment File for Specific Alleles.</p>

Data sets and functions for chi-squared Hardy-Weinberg and case-control association tests of highly polymorphic genetic data [e.g., human leukocyte antigen (HLA) data]. Performs association tests at multiple levels of polymorphism (haplotype, locus and HLA amino-acids) as described in Pappas DJ, Marin W, Hollenbach JA, Mack SJ (2016) <doi:10.1016/j.humimm.2015.12.006>. Combines rare variants to a common class to account for sparse cells in tables as described by Hollenbach JA, Mack SJ, Thomson G, Gourraud PA (2012) <doi:10.1007/978-1-61779-842-9_14>.

Steve Mack

BIGDAWG

Case-Control Analysis of Multi-Allelic Loci

AlignmentFilter function

Alignment Filter — AlignmentFilter

Alignment Filter

AlignmentFilter: Alignment Filter

Description

Usage

Arguments