CheckRelease

Logical to check for BIGDAWG package versions

Package

Logical to check the IMGT/HLA database version for the alignment bundled with BIGDAWG.

Alignment

Should any error be written to a file

Output

This updates the protein aligment used in checking HLA loci and alleles as well as in the amino acid analysis.

Data sets and functions for chi-squared Hardy-Weinberg and case-control association tests of highly polymorphic genetic data [e.g., human leukocyte antigen (HLA) data]. Performs association tests at multiple levels of polymorphism (haplotype, locus and HLA amino-acids) as described in Pappas DJ, Marin W, Hollenbach JA, Mack SJ (2016) <doi:10.1016/j.humimm.2015.12.006>. Combines rare variants to a common class to account for sparse cells in tables as described by Hollenbach JA, Mack SJ, Thomson G, Gourraud PA (2012) <doi:10.1007/978-1-61779-842-9_14>.

CheckRelease: Function to Check Release Versions

Description

Usage

Arguments