GL2Tab.Loci

Locus

Genotype

<p>Character Genetic system HLA or KIR</p>

System

Data sets and functions for chi-squared Hardy-Weinberg and case-control association tests of highly polymorphic genetic data [e.g., human leukocyte antigen (HLA) data]. Performs association tests at multiple levels of polymorphism (haplotype, locus and HLA amino-acids) as described in Pappas DJ, Marin W, Hollenbach JA, Mack SJ (2016) <doi:10.1016/j.humimm.2015.12.006>. Combines rare variants to a common class to account for sparse cells in tables as described by Hollenbach JA, Mack SJ, Thomson G, Gourraud PA (2012) <doi:10.1007/978-1-61779-842-9_14>.

Steve Mack

BIGDAWG

Case-Control Analysis of Multi-Allelic Loci

GL2Tab.Loci function

Locus Ordering for GL2Tab — GL2Tab.Loci

Locus Ordering for GL2Tab

GL2Tab.Loci: Locus Ordering for GL2Tab

Description

Usage

Arguments