L.wrapper

nloci

loci

The column names of the loci being analyzed.

loci.ColNames

genos

Case/Control or Phenotype groupings.

nGrp0

nGrp1

Data return carryover from main BIGDAWG function

Output

Summary display carryover from main BIGDAWG function

Verbose

Data sets and functions for chi-squared Hardy-Weinberg and case-control association tests of highly polymorphic genetic data [e.g., human leukocyte antigen (HLA) data]. Performs association tests at multiple levels of polymorphism (haplotype, locus and HLA amino-acids) as described in Pappas DJ, Marin W, Hollenbach JA, Mack SJ (2016) <doi:10.1016/j.humimm.2015.12.006>. Combines rare variants to a common class to account for sparse cells in tables as described by Hollenbach JA, Mack SJ, Thomson G, Gourraud PA (2012) <doi:10.1007/978-1-61779-842-9_14>.

L.wrapper: Locus Wrapper

Description

Usage

Arguments