PreCheck

Loci available in exon protein list alignment object.

All.ColNames

rescall

HLA bigdawg argument passed to function

Summary display carryover from BIGDAWG function.

Verbose

Data output carryover form BIGDAWG function

Output

Summary function for sample population within data file.

Data sets and functions for chi-squared Hardy-Weinberg and case-control association tests of highly polymorphic genetic data [e.g., human leukocyte antigen (HLA) data]. Performs association tests at multiple levels of polymorphism (haplotype, locus and HLA amino-acids) as described in Pappas DJ, Marin W, Hollenbach JA, Mack SJ (2016) <doi:10.1016/j.humimm.2015.12.006>. Combines rare variants to a common class to account for sparse cells in tables as described by Hollenbach JA, Mack SJ, Thomson G, Gourraud PA (2012) <doi:10.1007/978-1-61779-842-9_14>.

PreCheck: Data Summary Function

Description

Usage

Arguments