Tab2GL.wrapper

Character Genetic system HLA or KIR

System

Logical Should homozygote genotypes be a single allele for non-DRB345.

HZY.Red

Logical Should absent loci special designations be used

Abs.Fill

Integer How many cores can be used.

Cores

Expands GL strings to columns of adjacent locus pairs.

Data sets and functions for chi-squared Hardy-Weinberg and case-control association tests of highly polymorphic genetic data [e.g., human leukocyte antigen (HLA) data]. Performs association tests at multiple levels of polymorphism (haplotype, locus and HLA amino-acids) as described in Pappas DJ, Marin W, Hollenbach JA, Mack SJ (2016) <doi:10.1016/j.humimm.2015.12.006>. Combines rare variants to a common class to account for sparse cells in tables as described by Hollenbach JA, Mack SJ, Thomson G, Gourraud PA (2012) <doi:10.1007/978-1-61779-842-9_14>.

Tab2GL.wrapper: Genotype List String to Tabular Data Conversion

Description

Usage

Arguments