MergeData_Output

BD.out

Tests that are to be run as defined by Run.Tests.

Output directory defined by Results.Dir or default.

OutDir

Whole data set table construction of per haplotype for odds ratio, confidence intervals, and pvalues

Data sets and functions for chi-squared Hardy-Weinberg and case-control association tests of highly polymorphic genetic data [e.g., human leukocyte antigen (HLA) data]. Performs association tests at multiple levels of polymorphism (haplotype, locus and HLA amino-acids) as described in Pappas DJ, Marin W, Hollenbach JA, Mack SJ (2016) <doi:10.1016/j.humimm.2015.12.006>. Combines rare variants to a common class to account for sparse cells in tables as described by Hollenbach JA, Mack SJ, Thomson G, Gourraud PA (2012) <doi:10.1007/978-1-61779-842-9_14>.

MergeData_Output: Data Object Merge and Output

Description

Usage

Arguments