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BSagri (version 0.1-10)

Safety Assessment in Agricultural Field Trials

Description

Collection of functions, data sets and code examples for evaluations of field trials with the objective of equivalence assessment.

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Version

Install

install.packages('BSagri')

Monthly Downloads

192

Version

0.1-10

License

GPL-2

Last Published

April 20th, 2018

Functions in BSagri (0.1-10)

IAcontrastsCMAT

Interaction contrasts for a two-factorial design
Diptera

Soil eklektor data for some families of Diptera
Decomp

A simulated data set
ExNBCov

Simulated example data, drawn from a Negative Binomial Distribution
UnlogCI

Transform confidence intervals from glm fits.
R2Bugsdat1w.data.frame

For internal use.
allignment

Allignment according to one factor
Nematocera

Trap counts of Nematocera
summary.simplesimint

Detailed print out for simplesimint objects
ExPCov

Simulated example data following a Poisson distribution
Feeding

Pupation and Hatching rate in a feeding experiment with four varieties
R2Bugsdat1w

For internal use
Brachycera

Eklektor counts of Brachycera
SCSnp

Simultaneous confidence sets from empirical joint distribution.
print.np

Print function for SCSnp
CCDiff.default

Compute contrasts of chains of joint empirical distributions.
simplesimint

Simultaneous confidence intervals from raw estimates
vcov.gamlss

Extract variance covariance matrix from objects of class gamlss
fakeln

A simulated data set of lognormal data
MM1

Simulated data set for a simple mixed model
Lepi

Insect counts of 12 Species
CCRatio

Ratio - contrasts of parameters simulated in BUGS
c2compnames

Define row names of a contrast matrix, depending on its column names
checkargssim

For internal use.
Cica1

Catches of Planthoppers and Leafhoppers
minus2slash

Replace - by / in character strings
vcov.geeglm

Extract variance covariance matrix from objects of class geeglm
Cica2

Catches of Planthoppers and Leafhoppers
MMPois

Simulated data for a simple mixed model with Poisson response
MMPoisRep

Simulated data for a simple mixed model with Poisson response
modelparm.methods

For internal use. Extract model parameters needed for multcomp from objects of class gamlss or geeglm.
plotCI.Methods

Plot confidence intervals calculated by pairwiseCI
CIGLM

Wrapper to compute confidence intervals from glms
CCDiff

Contrasts of parameters simulated in BUGS
CInp

Construct local confidence intervals from joint empirical distribution.
CCRatio.default

Compute ratio contrasts of chains of joint empirical distributions.
CCRatio.boot

Compute ratio contrasts of chains of joint empirical distributions.
CountRep

Simulated count data incl. repeated measurements
IAcontrasts

Interaction contrasts for 2-factorial designs
CCDiff.boot

Compute contrasts of chains of joint empirical distributions.
BOOTSimpson

Simultaneous confidence intervals for Simpson indices