BTR (version 1.2.4)

gen_two_rmodel_dag: Generate two random DAG Boolean models with a specified number of steps apart

Description

This function generates a random DAG Boolean model, then get another random DAG Boolean model that is a specified number of steps apart by adding and/or removing genes. Difficult to generate completely directed graph with a specified number of steps apart.

Usage

gen_two_rmodel_dag(var, steps, mvar = length(var), in_amat = NULL, acyclic = T)

Arguments

var

character vector. A vector of single genes/variables to be used in the model.

steps

integer. Number of steps apart between the two models. If steps=0, give completely random starting model.

mvar

integer. Maximum number of variables in act or inh rule. Default to length(var).

in_amat

matrix. Provide adjacency matrix of first model.

acyclic

logical. Whether to restrict the model to being acyclic or not. Defaults to TRUE.