BTR (version 1.2.4)

minmod_model: Minimal modification of whole Boolean model

Description

This function generates all possible boolean models minimally modified. Returns a lists of 2 lists, deleted models and added models

Usage

minmod_model(bm, index = NULL, overlap_gene = NULL, sep_list = F, encoded = F, model_encoding, and_bool = NULL, self_loop = F)

Arguments

bm

S4 BoolModel object.

index

integer. Specifying rule of which gene to modify. If NULL, modifies all rules in the model. Defaults to NULL.

overlap_gene

character vector. Specify which genes are present in both model and data inputs.

sep_list

logical. Separate add and del lists.

encoded

logical. Return Boolean models in encoded form to save space.

model_encoding

list. Only used if encoded=T.

and_bool

logical. Default to check_and().

self_loop

logical. Whether to allow self_loop in random starting model. Default to F.