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BaSTA (version 2.0.0)

Age-Specific Bayesian Survival Trajectory Analysis from Incomplete Census or Capture-Recapture/Recovery Data

Description

Estimates survival and mortality with covariates from census or capture-recapture/recovery data in a Bayesian framework when many individuals are of unknown age. It includes tools for data checking, model diagnostics and outputs such as life-tables and plots, as described in Colchero, Jones, and Rebke (2012) and Colchero et al. (2021) .

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Version

Install

install.packages('BaSTA')

Monthly Downloads

434

Version

2.0.0

License

GPL (>= 3)

Maintainer

Fernando Colchero

Last Published

July 8th, 2024

Functions in BaSTA (2.0.0)

BaSTA-package

BaSTA: Parametric Bayesian estimation of age-specific survival for truncated and censored capture-recapture or census data.
FixCMRdata

Fix issues on CMR input data for BaSTA.
DataCheck

Error checking for BaSTA input data.
bastaCensOut

Output from a Bayesian Survival Trajectory Analysis (BaSTA) analysis on a simulated census dataset.
bastaCMRdat

Example of capture-mark-recapture data for BaSTA analysis.
CensusToCaptHist

Constructs a capture-history matrix from repeated individual observations to be used in Bayesian Survival Trajectory Analysis (BaSTA).
bastaCensDat

Example of census data for BaSTA analysis.
summary.bastaCheckCMR

Summary of outputs from the data checking function in BaSTA.
bastaCMRout

Output from a Bayesian Survival Trajectory Analysis (BaSTA) analysis on a simulated capture-mark-recapture (CMR) dataset.
summary.basta

Summarizing and plotting Bayesian Survival Trajectory Analysis (BaSTA) model outputs.
basta

Parametric Bayesian estimation of age-specific survival for left-truncated and right-censored capture-mark-recapture or census data.