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BaSTA (version 1.3)

A package for estimating age-specific survival from incomplete capture-recapture/recovery data

Description

This package estimates survival and mortality with covariates from capture-recapture/recovery data in a Bayesian framework when many individuals are of unknown age. It includes tools for data checking, model diagnostics and outputs such as life-tables and plots.

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Version

Install

install.packages('BaSTA')

Monthly Downloads

526

Version

1.3

License

GPL

Maintainer

Fernando Colchero

Last Published

July 13th, 2012

Functions in BaSTA (1.3)

sim1Out

Output from a Bayesian Survival Trajectory Analysis (BaSTA) analysis on a simulated dataset
PlotMultiMort

Plots mortality trajectories for multiple BaSTA objects.
MakeLifeTable

A function for calculating standard cohort-based life tables from age at death data.
CensusToCaptHist

Constructs capture-history matrix from census matrix to be used in Bayesian Survival Trajectory Analysis (BaSTA).
DataCheck

A function to check the input data file for a Bayesian Survival Trajectory Analysis (BaSTA) analysis.
BaSTA-package

BaSTA: a package for parametric Bayesian estimation of age-specific survival for truncated and censored capture-recapture/recovery records.
MakeCovMat

Function to build a matrix of covariates (i.e. design matrix) for a Bayesian Survival Trajectory Analysis (BaSTA) analysis.
sim1

Simulated dataset to demonstrate Bayesian Survival Trajectory Analysis (BaSTA)
summary.basta

Summarizing and plotting Bayesian Survival Trajectory Analysis (BaSTA) model outputs.
PlotLexis

Function to plot a Lexis diagram from a Bayesian Survival Trajectory Analysis (BaSTA) analysis object.
basta

Parametric Bayesian estimation of age-specific survival for left-truncated and right-censored capture-recapture/recovery data.