Arena-constructor

Arena

A number giving the horizontal grid size in cm.

A number giving the vertical grid size in cm.

A number giving the horizontal size of the environment.

A number giving the vertical size of the environment.

An integer refering to the random number seed used to be reproducible

seed

Arguments of <code><a rd-options="" href="/link/Arena-class?package=BacArena&version=1.8.2" data-mini-rdoc="BacArena::Arena-class">Arena-class</a></code>

Constructor of the S4 class <code><a rd-options="" href="/link/Arena-class?package=BacArena&version=1.8.2" data-mini-rdoc="BacArena::Arena-class">Arena-class</a></code>

Can be used for simulation of organisms living in
communities (Bauer and Zimmermann (2017) <doi:10.1371/journal.pcbi.1005544>).
Each organism is represented individually and genome scale
metabolic models determine the uptake and release of compounds. Biological
processes such as movement, diffusion, chemotaxis and kinetics are available
along with data analysis techniques.

Johannes Zimmermann

BacArena

Modeling Framework for Cellular Communities in their
Environments

Eugen Bauer

Arena-constructor function

Arguments of <code><a rd-options='' href='Arena-class'>Arena-class</a></code>

Constructor of the S4 class <code><a rd-options='' href='Arena-class'>Arena-class</a></code>

Constructor of the S4 class <code><a rd-options='' href='Arena-class'>Arena-class</a></code> — Arena-constructor

Constructor of the S4 class <code><a rd-options='' href='Arena-class'>Arena-class</a></code>

Constructor of the S4 class <code><a rd-options="" href="/link/Arena-class?package=BacArena&version=1.8.2" data-mini-rdoc="BacArena::Arena-class">Arena-class</a></code>

Arena-constructor: Constructor of the S4 class `Arena-class`

Description

Usage

Arguments