Human-class

Structure of the S4 class <code>Human</code> inheriting from class <code><a rd-options="" href="/link/Organism-class?package=BacArena&version=1.8.2" data-mini-rdoc="BacArena::Organism-class">Organism-class</a></code> representing human cells.

Can be used for simulation of organisms living in
communities (Bauer and Zimmermann (2017) <doi:10.1371/journal.pcbi.1005544>).
Each organism is represented individually and genome scale
metabolic models determine the uptake and release of compounds. Biological
processes such as movement, diffusion, chemotaxis and kinetics are available
along with data analysis techniques.

Johannes Zimmermann

BacArena

Modeling Framework for Cellular Communities in their
Environments

Eugen Bauer

Human-class function

<dl class="dl-horizontal">
<dt><code>objective</code></dt><dd>A character vector representing the current reaction which should be used as an objective function for the flux balance analysis.</dd>
</dl>

Slots

Structure of the S4 class <code>Human</code> inheriting from class <code><a rd-options='' href='Organism-class'>Organism-class</a></code> representing human cells.

Human-class: Structure of the S4 class "Human"

Description

Arguments

Slots