BacArena (version 1.8.2)

changeOrg: Change organisms in the environment

Description

The generic function changeOrg changes organisms in the environment.

Usage

changeOrg(object, neworgdat)
# S4 method for Arena
changeOrg(object, neworgdat)

Arguments

object

An object of class Arena.

neworgdat

A data frame with new information about the accumulated biomass, type, phenotype, x and y position for each individual in the environment.

Details

The argument neworgdat contains the same information as the orgdat slot of Arena-class. The orgdat slot of an Arena object can be used to create neworgdat.

See Also

Arena-class and addOrg

Examples

# NOT RUN {
data(Ec_core, envir = environment()) #get Escherichia coli core metabolic model
bac <- Bac(Ec_core,deathrate=0.05,
           minweight=0.05,growtype="exponential") #initialize a bacterium
arena <- Arena(n=20,m=20) #initialize the environment
arena <- addOrg(arena,bac,amount=10) #add 10 organisms
neworgdat <- arena@orgdat #get the current orgdat
neworgdat <- neworgdat[-1,] #remove the first individual
arena <- changeOrg(arena,neworgdat)
# }