The generic function getPhenotype implements an identification of organism phenotypes.
getPhenotype(object, cutoff = 1e-06, fbasol, par = FALSE)# S4 method for Organism
getPhenotype(object, cutoff = 1e-06, fbasol, par = FALSE)
An object of class Organisms.
A number giving the cutoff value by which value of objective function is considered greater than 0.
Problem object according to the constraints and then solved with optimizeProb.
A boolean indicating if running in parallel mode.
Returns the phenotype of the organisms where the uptake of substances is indicated by a negative and production of substances by a positive number
The phenotypes are defined by flux through exchange reactions, which indicate potential differential substrate usages. Uptake of substances is indicated by a negative and production of substances by a positive number.