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BacArena (version 1.8.2)

plotPhenCurve: Plot growth curve for several simulations

Description

The function plotPhenCurve takes a list of simulations and plots the time course of species with standard deviation.

Usage

plotPhenCurve(
  simlist,
  subs,
  phens = NULL,
  time = c(NULL, NULL),
  cluster = TRUE,
  inAll = TRUE,
  col = colpal3,
  with_gc = FALSE,
  return_dat = FALSE
)

Arguments

simlist

A list of simulations (eval objects).

subs

A vector of substance names that are used for phenotype clustering.

phens

If phencurve is given then phens specifies the phenotypes which sould be plotted again.

time

Vector with two entries defining start and end time

cluster

True if phenotypes should be clustered/condensed.

inAll

True if only phenotypes which occur in all replicates should be considered

col

Vector with color that should be used

with_gc

True if growth curve of organisms should be included

return_dat

Should data be returned? (default false)