extractGeneAssociations

an object of class <code>SBMLDocument</code>

database


Extracts all information on genes associated to reactions from an rsbml document containing a
metabolic reconstruction database (e.g. Recon2).
The associated information is parsed from the "<notes>" tag of each
reaction's SBML representation.
</notes>

 gene 

This package provides an interface to simulate metabolic
reconstruction from the BiGG database(http://bigg.ucsd.edu/)
and other metabolic reconstruction databases. The package facilitates
flux balance analysis (FBA) and the sampling of feasible flux
distributions. Metabolic networks and estimated fluxes can be
visualized with hypergraphs.

Anand K Gavai  Hannes
 Hettling hanneshettlingnaturalisnl

BiGGR

Constraint based modeling in R using metabolic reconstruction databases

extractGeneAssociations function

an object of class <code><linkS4class>SBMLDocument</linkS4class></code>

Extracts all information on genes associated to reactions from an rsbml document containing a
metabolic reconstruction database (e.g. Recon2).
The associated information is parsed from the "<notes>" tag of each
reaction's SBML representation.

extractGeneAssociations: Extract informations on genes from a given database

Description

Usage

Arguments

Value

References

See Also

Examples