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BioQC (version 1.0.0)

Detect tissue heterogeneity in expression profiles with gene sets

Description

BioQC performs quality control of high-throughput expression data based on tissue gene signatures

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Version

Version

1.0.0

License

LGPL (>=2)

Maintainer

Jitao David Zhang

Last Published

February 15th, 2017

Functions in BioQC (1.0.0)

readGmt

Read in gene sets from a GMT file
entropy

Shannon entropy and related concepts
filterPmat

Filter rows of p-value matrix under the significance threshold
wmwTest

Wilcoxon-Mann-Whitney rank sum test for high-throughput expression profiling data
gini

Calculate Gini Index of a numeric vector
absLog10p

Absolute base-10 logarithm of p-values