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BoSSA (version 1.2)

a Bunch of Structure and Sequence Analysis

Description

Sort sequence from genbank. Retrieve sequence information from genbank (designed for viruses sequences and retrieve information such as isolation date and host). BLAST sequence and accession numbers. Detect group of sequences presenting phylogeography signal. Read PDB file (protein 3D structure file).

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Version

Install

install.packages('BoSSA')

Monthly Downloads

379

Version

1.2

License

GPL

Maintainer

ORPHANED

Last Published

January 26th, 2010

Functions in BoSSA (1.2)

grpPhylogeo

Determine sets of sequence presenting phylogeography signal
InfoGenBank

Download sequence information from GenBank
read.PDB

read Protein Data Bank (PDB) file
TaxoGB

Search for taxonomy information in genbank from a text query
blast

use NCBI blast
distGPS

Compute physical distance between point using GPS coordinates
FastaSorter

Rename and get information from fasta sequences set download from GenBank