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CGHbase (version 1.32.0)

CGHbase: Base functions and classes for arrayCGH data analysis.

Description

Contains functions and classes that are needed by arrayCGH packages.

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Version

Version

1.32.0

License

GPL

Issues

0

Pull Requests

1

Stars

0

Forks

3

Maintainer

Mark de Wiel

Last Published

February 15th, 2017

Functions in CGHbase (1.32.0)

summaryPlot

Visualization of aCGH profiles.
copynumber

Retrieve copynumber data from cgh objects.
WiltingRaw

Raw log2 ratios from cervical cancer arrayCGH data.
probloss

Retrieve call probabilities from a cghCall object.
cghCall

Class to contain and describe called array comparative genomic hybridization data.
WiltingNorm

Normalized log2 ratios from cervical cancer arrayCGH data.
frequencyPlotCalls

Visualization of aCGH profiles.
make_cghRaw

Convert a dataframe or textfile to an object of class cghRaw.
cghRegions

Class to contain and describe array comparative genomic hybridization regions data.
cghRaw

Class to contain and describe raw or normalized array comparative genomic hybridization data.
WiltingCalled

Cervical cancer arrayCGH data called with CGHcall
Wilting

Cervical cancer arrayCGH data
regions

Retrieve regions data from cghRegions object.
cghSeg

Class to contain and describe segmented array comparative genomic hybridization data.
plot.cghRaw

Plot aCGH data.
chromosomes

Retrieve feature position data from cgh objects.
WiltingSeg

Segmented log2 ratios from cervical cancer arrayCGH data.
frequencyPlot

Visualization of aCGH regions.
WiltingRegions

Regions of cervical cancer arrayCGH data as defined by CGHregions
CGHbase-package

CGHbase: Base functions and classes for arrayCGH data analysis.
avedist

Retrieve regions information from cghRegions object.