CHAT (version 1.1)

getCanonicalLines: Regression lines on canonical points with same number of minor alleles

Description

This function performs linear regression on canonical points with same number of minor alleles. This is an approximation of the real data grid to achieve faster computational speed.

Usage

getCanonicalLines(oo, p, type = 1, para)

Arguments

oo

Origin Cluster, returned by getOrigin()

p

numeric, AGP value. see getGrid() for details.

type

integer, ploidy indicator. 1, diploid; 2, tetraploid; 3, hexaploid

para

list, parameters returned from getPara()

Value

A list including the following elements:

b

slope of the line

k

intercept of the line

oo

Origin Cluster

Examples

oo=NULL
oo$x0=0.02
oo$y0=0.1
oo$list=c()
cali=getCanonicalLines(oo,0.8,para=getPara())