gatherInitialClusters

A workflow of (a) meta-clustering based on
inter-group similarity measures and (b) a ground-truth-free test metric to
assess the biological correctness of integration in real datasets. See Hu Z,
Ahmed A, Yau C (2021) <doi:10.1101/2021.03.29.437525> for
more details.

Zhiyuan Hu

CIDER

Meta-Clustering for Single-Cell Data Integration and Evaluation

Christopher Yau

gatherInitialClusters function

<dl><dt>seu_list</dt>
<dd>A list containing Seurat objects. Required.</dd>
<dt>seu</dt>
<dd>A Seurat object</dd></dl>

Arguments

<ul>
<li><code>gatherInitialClusters</code>: initial clustering results from a Seurat object list to one
Seurat object. Follows the function `mergeInitialClusters`.</li>
</ul>

Functions

Gather initial cluster names — gatherInitialClusters

<dl>

<dt>seu_list</dt>
<dd>A list containing Seurat objects. Required.</dd>


<dt>seu</dt>
<dd>A Seurat object</dd>

</dl>

gatherInitialClusters: Gather initial cluster names

Description

Usage

Value

Arguments

Functions

See Also