Merge Initial Clusters
mergeInitialClusters(
seu_list,
dist_list,
use = "coef",
method = "hc",
hc.method = "average",
cutree.by = "h",
cutree.h = 0.6,
cutree.k = 3
)a list of Seurat objects containing the updated initial clustering information in `seu_list[[seu_itor]]$inicluster`. The original initial cluster information is stored in `seu_list[[seu_itor]]$inicluster_tmp`.
A list containing Seurat objects. Required.
A list containing similarity matrices. The output of `getDistMat ()`
Default: "coef". No other option available currently.
method = "hc"
Passed to the `method` parameter of `hclust()`. Default: "average"
Cut trees by height ("h", default) or number of clusters ("k")
Height used to cut the tree. Default: 0.6.
Number of clusters used to cut the tree. Default: 3.