plotDistMat

This function creates a heatmap of the similarity matrix computed by <code>getDistMat()</code>.

A workflow of (a) meta-clustering based on
inter-group similarity measures and (b) a ground-truth-free test metric to
assess the biological correctness of integration in real datasets. See Hu Z,
Ahmed A, Yau C (2021) <doi:10.1101/2021.03.29.437525> for
more details.

Zhiyuan Hu

CIDER

Meta-Clustering for scRNA-Seq Integration and Evaluation

Christopher Yau

Ahmed Ahmed

plotDistMat function

<dl><dt>dist.list</dt>
<dd>A list representing the similarity matrix output by <code>getDistMat()</code>. Required.</dd>
<dt>use</dt>
<dd>Character string specifying the similarity measure to use. Default is "coef". 
No other option is currently available.</dd></dl>

Arguments

Plot Similarity Matrix with pheatmap — plotDistMat

<dl>

<dt>dist.list</dt>
<dd>A list representing the similarity matrix output by <code>getDistMat()</code>. Required.</dd>


<dt>use</dt>
<dd>Character string specifying the similarity measure to use. Default is "coef". 
No other option is currently available.</dd>

</dl>

plotDistMat: Plot Similarity Matrix with pheatmap

Description

Usage

Value

Arguments

See Also